Index

_

_initialized_from (tigramite.data_processing.DataFrame.self attribute)

A

add_densityplot() (tigramite.plotting.setup_density_matrix method) add_found_context_link_assumptions() (tigramite.jpcmciplus.JPCMCIplus method) add_lagfuncs() (tigramite.plotting.setup_matrix method) add_scatterplot() (tigramite.plotting.setup_scatter_matrix method) adjustfig() (tigramite.plotting.setup_density_matrix method) (tigramite.plotting.setup_scatter_matrix method)

all_parents (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute) analysis_mode (tigramite.data_processing.DataFrame.self attribute) assume_exogenous_context() (tigramite.jpcmciplus.JPCMCIplus method)

B

bootstrap (tigramite.data_processing.DataFrame.self attribute)

C

CausalEffects (class in tigramite.causal_effects) check_optimality() (tigramite.causal_effects.CausalEffects method) check_shortest_path() (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) check_stationarity() (in module tigramite.toymodels.structural_causal_processes) check_XYS_paths() (tigramite.causal_effects.CausalEffects method)

clean_link_assumptions() (tigramite.jpcmciplus.JPCMCIplus method) clean_system_link_assumptions() (tigramite.jpcmciplus.JPCMCIplus method) CMIknn (class in tigramite.independence_tests.cmiknn) CMIsymb (class in tigramite.independence_tests.cmisymb) CondIndTest (class in tigramite.independence_tests.independence_tests_base) construct_array() (tigramite.data_processing.DataFrame method)

D

dag_to_links() (in module tigramite.toymodels.structural_causal_processes) data_type (tigramite.data_processing.DataFrame.self attribute) DataFrame (class in tigramite.data_processing) datasets (tigramite.data_processing.DataFrame.self attribute) datatime (tigramite.data_processing.DataFrame.self attribute)

discover_dummy_system_links() (tigramite.jpcmciplus.JPCMCIplus method) discover_lagged_context_system_links() (tigramite.jpcmciplus.JPCMCIplus method) discover_system_system_links() (tigramite.jpcmciplus.JPCMCIplus method) dummy_ci_test (tigramite.jpcmciplus.JPCMCIplus attribute) dummy_parents (tigramite.jpcmciplus.JPCMCIplus attribute)

F

fit() (tigramite.models.Prediction method) fit_bootstrap_of() (tigramite.causal_effects.CausalEffects method) fit_full_model() (tigramite.models.Models method)

fit_model() (tigramite.models.LinearMediation method) fit_model_bootstrap() (tigramite.models.LinearMediation method) fit_total_effect() (tigramite.causal_effects.CausalEffects method) fit_wright_effect() (tigramite.causal_effects.CausalEffects method)

G

generate_and_save_nulldists() (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) generate_nulldist() (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) generate_structural_causal_process() (in module tigramite.toymodels.structural_causal_processes) get_ace() (tigramite.models.LinearMediation method) get_acf() (in module tigramite.data_processing) get_acs() (tigramite.models.LinearMediation method) get_all_ace() (tigramite.models.LinearMediation method) get_all_acs() (tigramite.models.LinearMediation method) get_all_amce() (tigramite.models.LinearMediation method) get_amce() (tigramite.models.LinearMediation method) get_analytic_confidence() (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.parcorr.ParCorr method) (tigramite.independence_tests.robust_parcorr.RobustParCorr method) get_analytic_significance() (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) (tigramite.independence_tests.gsquared.Gsquared method) (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.parcorr.ParCorr method) (tigramite.independence_tests.parcorr_mult.ParCorrMult method) (tigramite.independence_tests.regressionCI.RegressionCI method) (tigramite.independence_tests.robust_parcorr.RobustParCorr method) get_block_length() (in module tigramite.data_processing) get_bootstrap_confidence() (tigramite.independence_tests.independence_tests_base.CondIndTest method) get_bootstrap_of() (tigramite.models.LinearMediation method) get_ce() (tigramite.models.LinearMediation method) get_ce_max() (tigramite.models.LinearMediation method) get_coeff() (tigramite.models.LinearMediation method) get_coefs() (tigramite.models.Models method) get_conditional_entropy() (tigramite.independence_tests.cmiknn.CMIknn method) get_conditional_mce() (tigramite.models.LinearMediation method) get_confidence() (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) get_dependence_measure() (tigramite.independence_tests.cmiknn.CMIknn method) (tigramite.independence_tests.cmisymb.CMIsymb method) (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) (tigramite.independence_tests.gsquared.Gsquared method) (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.parcorr.ParCorr method) (tigramite.independence_tests.parcorr_mult.ParCorrMult method) (tigramite.independence_tests.parcorr_wls.ParCorrWLS method) (tigramite.independence_tests.regressionCI.RegressionCI method) (tigramite.independence_tests.robust_parcorr.RobustParCorr method)

get_dict_from_graph() (tigramite.causal_effects.CausalEffects static method) get_fixed_thres_significance() (tigramite.independence_tests.independence_tests_base.CondIndTest method) get_general_fitted_model() (tigramite.models.Models method) get_general_prediction() (tigramite.models.Models method) get_graph_from_dict() (tigramite.causal_effects.CausalEffects static method) get_graph_from_links() (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) get_graph_from_pmatrix() (tigramite.pcmci.PCMCI method) get_joint_ce() (tigramite.models.LinearMediation method) get_joint_ce_matrix() (tigramite.models.LinearMediation method) get_joint_mce() (tigramite.models.LinearMediation method) get_lagged_dependencies() (tigramite.pcmci.PCMCI method) get_links_from_graph() (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) get_mce() (tigramite.models.LinearMediation method) get_measure() (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) get_mediation_graph_data() (tigramite.models.LinearMediation method) get_mediators() (tigramite.causal_effects.CausalEffects method) get_model_selection_criterion() (tigramite.independence_tests.cmiknn.CMIknn method) (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) (tigramite.independence_tests.parcorr.ParCorr method) (tigramite.independence_tests.parcorr_mult.ParCorrMult method) (tigramite.independence_tests.parcorr_wls.ParCorrWLS method) (tigramite.independence_tests.robust_parcorr.RobustParCorr method) get_optimal_set() (tigramite.causal_effects.CausalEffects method) get_predictors() (tigramite.models.Prediction method) get_residuals_cov_mean() (tigramite.models.Models method) get_shuffle_significance() (tigramite.independence_tests.cmiknn.CMIknn method) (tigramite.independence_tests.cmisymb.CMIsymb method) (tigramite.independence_tests.gpdc.GPDC method) (tigramite.independence_tests.gpdc_torch.GPDCtorch method) (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.parcorr.ParCorr method) (tigramite.independence_tests.parcorr_mult.ParCorrMult method) (tigramite.independence_tests.parcorr_wls.ParCorrWLS method) (tigramite.independence_tests.robust_parcorr.RobustParCorr method) get_test_array() (tigramite.models.Prediction method) get_train_array() (tigramite.models.Prediction method) get_tsg() (tigramite.models.LinearMediation method) get_val_matrix() (tigramite.models.LinearMediation method) (tigramite.models.Models method) GPDC (class in tigramite.independence_tests.gpdc) GPDCtorch (class in tigramite.independence_tests.gpdc_torch) Gsquared (class in tigramite.independence_tests.gsquared)

I

iterations (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute)

J

JPCMCIplus (class in tigramite.jpcmciplus)

L

largest_time_step (tigramite.data_processing.DataFrame.self attribute) LinearMediation (class in tigramite.models)

links_to_graph() (in module tigramite.toymodels.structural_causal_processes) lowhighpass_filter() (in module tigramite.data_processing) LPCMCI (class in tigramite.lpcmci)

M

M (tigramite.data_processing.DataFrame.self attribute) mask (tigramite.data_processing.DataFrame.self attribute) measure (tigramite.independence_tests.cmiknn.CMIknn property) (tigramite.independence_tests.cmisymb.CMIsymb property) (tigramite.independence_tests.gpdc.GPDC property) (tigramite.independence_tests.gpdc_torch.GPDCtorch property) (tigramite.independence_tests.gsquared.Gsquared property) (tigramite.independence_tests.independence_tests_base.CondIndTest property) (tigramite.independence_tests.oracle_conditional_independence.OracleCI property) (tigramite.independence_tests.parcorr.ParCorr property) (tigramite.independence_tests.parcorr_mult.ParCorrMult property) (tigramite.independence_tests.regressionCI.RegressionCI property) (tigramite.independence_tests.robust_parcorr.RobustParCorr property)

missing_flag (tigramite.data_processing.DataFrame.self attribute) mode (tigramite.jpcmciplus.JPCMCIplus attribute) Models (class in tigramite.models) module tigramite.data_processing tigramite.plotting tigramite.toymodels.structural_causal_processes mult_corr() (tigramite.independence_tests.parcorr_mult.ParCorrMult method)

N

N (tigramite.data_processing.DataFrame.self attribute) (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute)

net_to_tsg() (tigramite.models.LinearMediation method)

O

observed_context_parents (tigramite.jpcmciplus.JPCMCIplus attribute)

OracleCI (class in tigramite.independence_tests.oracle_conditional_independence) ordinal_patt_array() (in module tigramite.data_processing)

P

ParCorr (class in tigramite.independence_tests.parcorr) ParCorrMult (class in tigramite.independence_tests.parcorr_mult) ParCorrWLS (class in tigramite.independence_tests.parcorr_wls) PCMCI (class in tigramite.pcmci) plot_densityplots() (in module tigramite.plotting) plot_graph() (in module tigramite.plotting) plot_lagfuncs() (in module tigramite.plotting) plot_mediation_graph() (in module tigramite.plotting) plot_mediation_time_series_graph() (in module tigramite.plotting) plot_scatterplots() (in module tigramite.plotting) plot_time_series_graph() (in module tigramite.plotting) plot_timeseries() (in module tigramite.plotting)

plot_tsg() (in module tigramite.plotting) predict() (tigramite.models.Prediction method) predict_bootstrap_of() (tigramite.causal_effects.CausalEffects method) predict_full_model() (tigramite.models.Models method) predict_total_effect() (tigramite.causal_effects.CausalEffects method) predict_wright_effect() (tigramite.causal_effects.CausalEffects method) Prediction (class in tigramite.models) print_array_info() (tigramite.data_processing.DataFrame method) print_info() (tigramite.independence_tests.independence_tests_base.CondIndTest method) print_results() (tigramite.pcmci.PCMCI method) print_significant_links() (tigramite.pcmci.PCMCI method) pval_max (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute)

Q

quantile_bin_array() (in module tigramite.data_processing)

R

reference_points (tigramite.data_processing.DataFrame.self attribute) RegressionCI (class in tigramite.independence_tests.regressionCI) remove_dummy_link_assumptions() (tigramite.jpcmciplus.JPCMCIplus method) return_parents_dict() (tigramite.pcmci.PCMCI method) return_significant_links() (tigramite.pcmci.PCMCI method) RobustParCorr (class in tigramite.independence_tests.robust_parcorr) RPCMCI (class in tigramite.rpcmci) run_bivci() (tigramite.pcmci.PCMCI method) run_fullci() (tigramite.pcmci.PCMCI method) run_jpcmciplus() (tigramite.jpcmciplus.JPCMCIplus method)

run_lpcmci() (tigramite.lpcmci.LPCMCI method) run_mci() (tigramite.pcmci.PCMCI method) run_pc_stable() (tigramite.pcmci.PCMCI method) run_pcalg() (tigramite.pcmci.PCMCI method) run_pcalg_non_timeseries_data() (tigramite.pcmci.PCMCI method) run_pcmci() (tigramite.pcmci.PCMCI method) run_pcmciplus() (tigramite.pcmci.PCMCI method) run_rpcmci() (tigramite.rpcmci.RPCMCI method) run_test() (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) run_test_raw() (tigramite.independence_tests.independence_tests_base.CondIndTest method)

S

savefig() (tigramite.plotting.setup_matrix method) set_dataframe() (tigramite.independence_tests.independence_tests_base.CondIndTest method) (tigramite.independence_tests.oracle_conditional_independence.OracleCI method) (tigramite.independence_tests.regressionCI.RegressionCI method) set_mask_type() (tigramite.independence_tests.independence_tests_base.CondIndTest method) setup_density_matrix (class in tigramite.plotting) setup_matrix (class in tigramite.plotting)

setup_scatter_matrix (class in tigramite.plotting) smooth() (in module tigramite.data_processing) space_context_nodes (tigramite.jpcmciplus.JPCMCIplus attribute) space_dummy (tigramite.jpcmciplus.JPCMCIplus attribute) structural_causal_process() (in module tigramite.data_processing) (in module tigramite.toymodels.structural_causal_processes) system_nodes (tigramite.jpcmciplus.JPCMCIplus attribute)

T

T (tigramite.data_processing.DataFrame.self attribute) (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute) tigramite.data_processing module tigramite.plotting module tigramite.toymodels.structural_causal_processes module

time_bin_with_mask() (in module tigramite.data_processing) time_context_nodes (tigramite.jpcmciplus.JPCMCIplus attribute) time_dummy (tigramite.jpcmciplus.JPCMCIplus attribute) time_offsets (tigramite.data_processing.DataFrame.self attribute) trafo2normal() (in module tigramite.data_processing) (tigramite.independence_tests.robust_parcorr.RobustParCorr method) tsg_to_net() (tigramite.models.LinearMediation method)

V

val_min (tigramite.jpcmciplus.JPCMCIplus attribute) (tigramite.pcmci.PCMCI attribute) values (tigramite.data_processing.DataFrame.self attribute)

var_names (tigramite.data_processing.DataFrame.self attribute) var_process() (in module tigramite.data_processing) (in module tigramite.toymodels.structural_causal_processes)

W

weighted_avg_and_std() (in module tigramite.data_processing)

write_csv() (in module tigramite.plotting)